Discussion:
[Open Babel] Convert CDX file to sdf file
t***@chem-is-try.com
2009-11-03 16:12:53 UTC
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<P>Dear sir,</P>
<P>I have Open babel software.I want to make SDF files from cdx files. </P>
<P>Is it possible to convert more than 1 cdx files to sdf files in one file with each product discription?</P>
<P>I look forward to hearing back &nbsp;from you soon.<BR>
</P>
<P>Sincerely,</P>
<P>Tejal Shah <BR>
CHEM-IS-TRY.INC <BR>
160-1 Liberty Street, <BR>
Liberty Corporate Park, <BR>
Metuchen, NJ 08840, USA <BR>
Phone: 732-372-7312 <BR>
Fax: 732-372-7312 <BR>
Toll Free: 1-877-CHEM-123 <BR>
www.chem-is-try.com </P></HTML>
<BR>
Geoffrey Hutchison
2009-11-06 15:14:54 UTC
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Post by t***@chem-is-try.com
Is it possible to convert more than 1 cdx files to sdf files in one
file with each product discription?
I'm not entirely sure what you mean. You can convert multiple CDX
files to SDF if you like:

babel *.cdx -osdf # Read all the CDX files in this directory, output
sdf, one for each CDX file.

Hope that helps,
-Geoff
Geoffrey Hutchison
2010-03-23 15:16:18 UTC
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Well, if you're having problems, please submit a bug report, and attach the file that's causing the error.
https://sourceforge.net/tracker/?atid=428740&group_id=40728&func=browse


Thanks very much,
-Geoff
Respected sir,
I am using OPENBABEL. I want to convert .cdx file to . sdf file.
But when it sees NO2 it will automatically converts to OH in sdf file . so my structure will not correct.
Same for CH3O it only shows O in sdf file.
Please guide me how i can solve this problem.
Thanks,
Tejal
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